Research
Medical images are measurements, and measurements come with an instrument attached. My work is organized around three questions about what a measurement can and cannot tell us. The papers below are a selection; the full list is under Publications.
See the patient, not the scanner
The same brain scanned on two machines gives two different images. Before anything downstream can be trusted (a volume, a segmentation, a risk score), the variation that comes from the instrument has to be separated from the variation that comes from the patient. Much of my training went into this problem, mostly through disentangled representation learning for MRI, and it now extends to CT reconstruction kernels and to studies that span more than a hundred scanners.
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HACA3: A Unified Approach for Multi-site MR Image Harmonization
Computerized Medical Imaging and Graphics, 2023
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Unsupervised MR Harmonization by Learning Disentangled Representations Using Information Bottleneck Theory
NeuroImage, 2021
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Information-based Disentangled Representation Learning for Unsupervised MR Harmonization
IPMI, 2021Best Poster Award
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Disentangling a Single MR Modality
DALI, 2022Best Paper Award
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Harmonizing MR Images Across 100+ Scanners: Multi-site Validation with Traveling Subjects and Real-world Protocols
MIDL, 2026Accepted
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Harmonizing the National Lung Screening Trial: Kernel Resolution and Field of View Compensation
PLOS ONE, 2026Accepted
Recover what was not captured
Clinical images are rarely complete. A chest CT is cropped to the lungs, a contrast is missing from a protocol, a study keeps a handful of 2D slices where a 3D volume was needed. I use generative models, recently latent diffusion and flow matching, to recover what the scanner did not capture: extending a truncated field of view, building 3D volumes from a few 2D slices, filling and synthesizing lesions, and synthesizing contrasts that were never acquired. The interesting part is not only making the missing region look right, but knowing what the recovered region can and cannot be used for.
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Beyond the Lungs: Extending the Field-of-View in Chest CT with Latent Diffusion Models
SPIE Medical Imaging 2025: Image Processing, 2025Oral
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Robust Body Composition Analysis by Generating 3D CT Volumes from Limited 2D Slices
SPIE Medical Imaging 2025: Image Processing, 2025Oral
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Bi-directional MS Lesion Filling And Synthesis Using Denoising Diffusion Implicit Model-based Lesion Repainting
SPIE Medical Imaging 2025: Image Processing, 2025Long oral
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Synthesizing Realistic Brain MR Images with Noise Control
SASHIMI, 2020Oral
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Synthetic Multi-inversion Time Magnetic Resonance Images for Visualization of Subcortical Structures
Journal of Medical Imaging, 2026
Ask what each measurement adds
A patient accumulates scans, time points, and records, and each one costs something to acquire, process, and interpret. I want to quantify what each of them actually adds to a clinical prediction, rather than assume that more data is always better. Lung cancer screening is where I am starting; it is the focus of my NIH/NCI K99/R00 award.
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Prospective Validation of Artificial Intelligence Lung Cancer Risk Prediction in a Screening Cohort
2026Under review
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An Artifact-based Agent Framework for Adaptive and Reproducible Medical Image Processing
MICCAI, 2026Accepted
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A Latent Space for Unsupervised MR Image Quality Control via Artifact Assessment
SPIE Medical Imaging 2023: Image Processing, 2023Oral
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Contrastive Patient-level Pretraining Enables Longitudinal and Multimodal Fusion for Lung Cancer Risk Prediction
MIDL, 2025
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Impact of Reconstruction Kernel Variability on Segmentation Consistency in Low-dose Thoracic CT
SPIE Medical Imaging 2026: Image Processing, 2026Long oralAccepted
Funding
- 2026–2031
Accelerating Early Diagnosis and Risk Assessment with Multimodal AI for Lung Cancer Care
NIH/NCI K99/R00 Pathway to Independence Award. Principal Investigator. - 2025–2030
Retrospective Magnetic Resonance Image Harmonization for Robust Federated Learning
NIH/NLM R01. Co-Investigator (MPI Dzung Pham and Jerry Prince). - 2025
Accessible Plug-and-Play AI: A Medical-informed Foundation Model for Consistent Lung CT Analysis
NSF NAIRR Pilot. Principal Investigator (25,000 H100 GPU hours). - 2025
Uncovering Brain Biotypes and Clinical Outcomes with a Neuroimage Foundation Model
NSF NAIRR Pilot. Co-Investigator (PI Yihao Liu).